Information for 1-CCATATAAGG (Motif 3)

A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C G A T C G A T C G T A C A G T G C T A A C G T C T A G A C T G
p-value:1e-38
log p-value:-8.910e+01
Information Content per bp:1.870
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.92%
Number of Background Sequences with motif95.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets55.5 +/- 17.5bp
Average Position of motif in Background49.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--CCATATAAGG
TNCCATATATGG
 A C G T A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CCATATAAGG--
TTCCATATATGGAA
 A C G T A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

SRF/MA0083.3/Jaspar

Match Rank:3
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCATATAAGG---
TGACCATATATGGTCA
 A C G T A C G T A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:CCATATAAGG
CCATATATGG
 A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCATATAAGG
GNCTATAAAAGG
 A C G T A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0184.1_Tbp_2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATATAAGG----
CCGATTTAAGCGACC
 A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCATATAAGG--
--NNATAAGGNN
 A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATATAAGG-----
GTATAAAAGGCGGGG
 A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATATAAGG-----
GTATAAAAGGCGGGG
 A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCATATAAGG
AAGCCATAAAA--
 A C G T A C G T A C G T A G T C A G T C C G T A C G A T G C T A G C A T G C T A C G T A A C T G A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T