Information for 6-GAGATAAATTTGC (Motif 12)

A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
Reverse Opposite:
A T C G A T G C C G T A T C G A C G T A A C G T A C G T C G A T G T C A A G C T G A T C C G A T A G T C
p-value:1e-12
log p-value:-2.780e+01
Information Content per bp:1.678
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif55.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets51.4 +/- 24.3bp
Average Position of motif in Background53.6 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGATAAATTTGC
GGCCATAAATCAC-
 A C G T A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGATAAATTTGC
HNRAATCAAT----
 A C G T A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGATAAATTTGC---
NNNNTGAATTCANNNC
 A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGATAAATTTGC----
--GAAAAAATTGCAAGG
 A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAGATAAATTTGC----
----TTCATTTGCATAT
 A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGATAAATTTGC
---ATGMATATDC
 A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGATAAATTTGC
NNTNTCATGAATGT--
 A C G T A C G T A C G T A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGATAAATTTGC
---NNTAATTAGN
 A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
A C G T A C G T A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGATAAATTTGC
GGCCATAAATCA--
 A C G T A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGATAAATTTGC
GGCCATAAATCA--
 A C G T A C T G G C T A C T A G C T G A A C G T G C T A C G T A T G C A C G A T A G C T C G A T A T C G A T G C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T