Information for 12-CTGCGTGAAC (Motif 17)

G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
Reverse Opposite:
C T A G A C G T G C A T A G T C C T G A A T G C T A C G A G T C C T G A C A T G
p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.668
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.26%
Number of Background Sequences with motif336.0
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets49.7 +/- 24.8bp
Average Position of motif in Background45.9 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGCGTGAAC
-TGCGTG---
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTGCGTGAAC
TTGCGTGCVA
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTGCGTGAAC
AANTCATGCGTGAA-
 A C G T A C G T A C G T A C G T A C G T G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGCGTGAAC
-TACGTGCV-
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGCGTGAAC
GGGTACGTGC--
 A C G T A C G T G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

EGR2/MA0472.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGCGTGAAC--
-TGCGTGGGCGT
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C A C G T A C G T
A C G T G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGCGTGAAC
GCTGTG-----
 A C G T G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCGTGAAC
GGACGTGC--
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCGTGAAC
RTACGTGC--
 G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGCGTGAAC-
NCTAAGTAAACA
 A C G T G T A C G A C T C T A G A T G C T A C G G A C T T C A G C G T A T G C A G A T C A C G T
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A