Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 806)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48087)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-93	-2.159e+02	0.0000	92.0	11.41%	221.2	0.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-76	-1.765e+02	0.0000	92.0	11.41%	346.7	0.72%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-71	-1.645e+02	0.0000	168.0	20.84%	1841.0	3.81%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-71	-1.641e+02	0.0000	145.0	17.99%	1317.3	2.72%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-69	-1.607e+02	0.0000	213.0	26.43%	3129.2	6.47%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-69	-1.598e+02	0.0000	176.0	21.84%	2106.7	4.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-68	-1.589e+02	0.0000	137.0	17.00%	1201.7	2.48%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-35	-8.185e+01	0.0000	93.0	11.54%	1116.2	2.31%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-35	-8.104e+01	0.0000	74.0	9.18%	686.1	1.42%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-34	-7.918e+01	0.0000	194.0	24.07%	4483.8	9.27%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-33	-7.695e+01	0.0000	90.0	11.17%	1113.8	2.30%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-32	-7.567e+01	0.0000	96.0	11.91%	1291.8	2.67%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-30	-7.098e+01	0.0000	82.0	10.17%	1000.0	2.07%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-28	-6.507e+01	0.0000	92.0	11.41%	1370.0	2.83%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-28	-6.482e+01	0.0000	57.0	7.07%	504.1	1.04%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-27	-6.305e+01	0.0000	41.0	5.09%	233.9	0.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-26	-6.185e+01	0.0000	97.0	12.03%	1583.5	3.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-19	-4.507e+01	0.0000	83.0	10.30%	1538.9	3.18%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-19	-4.472e+01	0.0000	305.0	37.84%	11323.5	23.41%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.828e+01	0.0000	40.0	4.96%	442.1	0.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-16	-3.821e+01	0.0000	31.0	3.85%	251.5	0.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-16	-3.755e+01	0.0000	33.0	4.09%	297.7	0.62%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-16	-3.748e+01	0.0000	178.0	22.08%	5647.1	11.68%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.216e+01	0.0000	90.0	11.17%	2650.4	5.48%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-9	-2.122e+01	0.0000	90.0	11.17%	2701.3	5.58%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-8	-2.035e+01	0.0000	55.0	6.82%	1327.1	2.74%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-2.029e+01	0.0000	81.0	10.05%	2370.3	4.90%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-8	-1.982e+01	0.0000	77.0	9.55%	2227.8	4.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-1.873e+01	0.0000	44.0	5.46%	982.3	2.03%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-8	-1.850e+01	0.0000	72.0	8.93%	2087.5	4.32%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.828e+01	0.0000	52.0	6.45%	1295.3	2.68%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-6	-1.596e+01	0.0000	48.0	5.96%	1238.8	2.56%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-6	-1.449e+01	0.0000	301.0	37.34%	14159.8	29.28%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-6	-1.423e+01	0.0000	66.0	8.19%	2073.6	4.29%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-6	-1.418e+01	0.0000	12.0	1.49%	113.2	0.23%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.400e+01	0.0000	54.0	6.70%	1574.2	3.25%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.390e+01	0.0000	92.0	11.41%	3274.7	6.77%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.274e+01	0.0000	32.0	3.97%	760.3	1.57%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-5	-1.207e+01	0.0001	100.0	12.41%	3813.8	7.89%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.070e+01	0.0002	9.0	1.12%	88.6	0.18%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-1.057e+01	0.0002	66.0	8.19%	2325.8	4.81%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.037e+01	0.0003	61.0	7.57%	2110.7	4.36%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.018e+01	0.0003	21.0	2.61%	453.9	0.94%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-1.017e+01	0.0003	54.0	6.70%	1807.9	3.74%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.014e+01	0.0003	106.0	13.15%	4304.0	8.90%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-1.013e+01	0.0003	49.0	6.08%	1587.9	3.28%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-9.926e+00	0.0004	100.0	12.41%	4026.6	8.32%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-9.567e+00	0.0005	48.0	5.96%	1580.7	3.27%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-9.493e+00	0.0006	33.0	4.09%	941.8	1.95%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-4	-9.441e+00	0.0006	20.0	2.48%	442.7	0.92%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-4	-9.241e+00	0.0007	46.0	5.71%	1514.0	3.13%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-9.192e+00	0.0007	40.0	4.96%	1253.4	2.59%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.620e+00	0.0012	45.0	5.58%	1511.4	3.12%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.309e+00	0.0017	43.0	5.33%	1443.4	2.98%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-8.135e+00	0.0019	118.0	14.64%	5162.2	10.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-8.122e+00	0.0019	55.0	6.82%	2010.7	4.16%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-3	-7.653e+00	0.0030	32.0	3.97%	1001.5	2.07%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-7.506e+00	0.0034	22.0	2.73%	593.5	1.23%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-7.397e+00	0.0038	82.0	10.17%	3405.4	7.04%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.381e+00	0.0038	40.0	4.96%	1374.6	2.84%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-7.316e+00	0.0040	19.0	2.36%	484.8	1.00%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-7.149e+00	0.0046	193.0	23.95%	9371.8	19.38%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.105e+00	0.0047	8.0	0.99%	115.5	0.24%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.079e+00	0.0048	35.0	4.34%	1170.7	2.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.000e+00	0.0051	118.0	14.64%	5324.9	11.01%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.714e+00	0.0067	86.0	10.67%	3693.5	7.64%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-6.661e+00	0.0070	21.0	2.61%	593.9	1.23%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-6.531e+00	0.0078	8.0	0.99%	126.8	0.26%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.354e+00	0.0092	58.0	7.20%	2322.7	4.80%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-6.235e+00	0.0102	4.0	0.50%	31.8	0.07%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-2	-6.124e+00	0.0112	12.0	1.49%	268.5	0.56%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-6.117e+00	0.0112	36.0	4.47%	1287.2	2.66%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.921e+00	0.0134	23.0	2.85%	717.6	1.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-5.719e+00	0.0161	12.0	1.49%	282.6	0.58%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-5.633e+00	0.0174	67.0	8.31%	2858.5	5.91%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-5.633e+00	0.0174	41.0	5.09%	1565.2	3.24%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.500e+00	0.0193	7.0	0.87%	118.5	0.25%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.354e+00	0.0221	47.0	5.83%	1885.8	3.90%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-5.296e+00	0.0231	23.0	2.85%	757.0	1.57%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.161e+00	0.0261	63.0	7.82%	2714.6	5.61%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-5.101e+00	0.0274	17.0	2.11%	508.3	1.05%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-4.942e+00	0.0317	61.0	7.57%	2640.9	5.46%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-4.927e+00	0.0318	69.0	8.56%	3056.5	6.32%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-4.886e+00	0.0327	65.0	8.06%	2854.7	5.90%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-4.809e+00	0.0349	28.0	3.47%	1020.4	2.11%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-4.784e+00	0.0354	28.0	3.47%	1022.4	2.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-4.712e+00	0.0376	28.0	3.47%	1028.3	2.13%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-4.660e+00	0.0392	205.0	25.43%	10594.6	21.90%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-4.642e+00	0.0394	34.0	4.22%	1321.5	2.73%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.581e+00	0.0414	23.0	2.85%	806.5	1.67%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-4.575e+00	0.0414	7.0	0.87%	141.9	0.29%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.553e+00	0.0417	18.0	2.23%	583.1	1.21%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-4.403e+00	0.0479	37.0	4.59%	1492.5	3.09%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.334e+00	0.0508	38.0	4.71%	1549.9	3.20%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.313e+00	0.0513	158.0	19.60%	8023.9	16.59%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.241e+00	0.0546	101.0	12.53%	4880.9	10.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-4.190e+00	0.0568	15.0	1.86%	474.0	0.98%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.095e+00	0.0618	44.0	5.46%	1879.5	3.89%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.079e+00	0.0622	80.0	9.93%	3773.9	7.80%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.076e+00	0.0622	7.0	0.87%	156.4	0.32%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.076e+00	0.0622	7.0	0.87%	156.8	0.32%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.023e+00	0.0639	4.0	0.50%	59.1	0.12%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.994e+00	0.0651	92.0	11.41%	4438.1	9.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.924e+00	0.0692	7.0	0.87%	161.4	0.33%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.848e+00	0.0739	48.0	5.96%	2117.3	4.38%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.836e+00	0.0741	92.0	11.41%	4469.1	9.24%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.802e+00	0.0760	28.0	3.47%	1111.8	2.30%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.707e+00	0.0828	8.0	0.99%	207.6	0.43%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.664e+00	0.0856	4.0	0.50%	66.3	0.14%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.649e+00	0.0861	47.0	5.83%	2093.9	4.33%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.643e+00	0.0861	48.0	5.96%	2146.8	4.44%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.572e+00	0.0913	68.0	8.44%	3218.4	6.65%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.532e+00	0.0942	24.0	2.98%	942.9	1.95%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.464e+00	0.1000	104.0	12.90%	5209.5	10.77%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.443e+00	0.1012	13.0	1.61%	432.4	0.89%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.437e+00	0.1012	15.0	1.86%	523.1	1.08%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.412e+00	0.1026	60.0	7.44%	2817.1	5.82%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.392e+00	0.1038	33.0	4.09%	1406.1	2.91%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.380e+00	0.1041	7.0	0.87%	181.9	0.38%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.330e+00	0.1086	42.0	5.21%	1878.5	3.88%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.300e+00	0.1101	2.0	0.25%	18.9	0.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.300e+00	0.1101	2.0	0.25%	18.1	0.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.184e+00	0.1225	8.0	0.99%	230.2	0.48%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.138e+00	0.1272	11.0	1.36%	362.6	0.75%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.107e+00	0.1303	37.0	4.59%	1649.5	3.41%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.087e+00	0.1319	45.0	5.58%	2072.5	4.28%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.026e+00	0.1390	14.0	1.74%	507.2	1.05%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.901e+00	0.1563	26.0	3.23%	1109.1	2.29%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-2.825e+00	0.1674	4.0	0.50%	87.6	0.18%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.810e+00	0.1686	5.0	0.62%	125.1	0.26%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.748e+00	0.1779	85.0	10.55%	4321.1	8.93%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.721e+00	0.1815	95.0	11.79%	4888.0	10.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.667e+00	0.1901	56.0	6.95%	2738.6	5.66%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.638e+00	0.1942	19.0	2.36%	785.4	1.62%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.606e+00	0.1991	30.0	3.72%	1354.9	2.80%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.603e+00	0.1991	4.0	0.50%	94.8	0.20%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-2.593e+00	0.1991	163.0	20.22%	8798.4	18.19%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.548e+00	0.2063	13.0	1.61%	498.0	1.03%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.546e+00	0.2063	7.0	0.87%	220.0	0.45%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.482e+00	0.2173	19.0	2.36%	802.7	1.66%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.462e+00	0.2200	187.0	23.20%	10233.2	21.16%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.335e+00	0.2482	28.0	3.47%	1288.1	2.66%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-2.317e+00	0.2508	24.0	2.98%	1080.3	2.23%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.266e+00	0.2621	12.0	1.49%	475.0	0.98%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.239e+00	0.2674	38.0	4.71%	1840.0	3.80%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.197e+00	0.2771	4.0	0.50%	109.3	0.23%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.188e+00	0.2776	24.0	2.98%	1098.3	2.27%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.175e+00	0.2794	7.0	0.87%	242.6	0.50%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.163e+00	0.2809	9.0	1.12%	337.8	0.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.143e+00	0.2846	63.0	7.82%	3241.4	6.70%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.129e+00	0.2868	30.0	3.72%	1427.6	2.95%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.084e+00	0.2981	64.0	7.94%	3312.3	6.85%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.078e+00	0.2981	39.0	4.84%	1925.0	3.98%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.064e+00	0.3001	5.0	0.62%	158.4	0.33%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.062e+00	0.3001	34.0	4.22%	1655.2	3.42%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.016e+00	0.3107	29.0	3.60%	1392.0	2.88%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.993e+00	0.3160	38.0	4.71%	1887.6	3.90%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.969e+00	0.3217	7.0	0.87%	256.9	0.53%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.954e+00	0.3245	24.0	2.98%	1133.8	2.34%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.950e+00	0.3245	34.0	4.22%	1676.7	3.47%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.890e+00	0.3416	29.0	3.60%	1414.5	2.92%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.868e+00	0.3469	3.0	0.37%	82.0	0.17%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.806e+00	0.3668	4.0	0.50%	127.0	0.26%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.719e+00	0.3977	2.0	0.25%	46.2	0.10%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.656e+00	0.4210	29.0	3.60%	1458.7	3.02%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.636e+00	0.4271	11.0	1.36%	487.1	1.01%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.636e+00	0.4271	1.0	0.12%	13.9	0.03%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.621e+00	0.4284	19.0	2.36%	916.5	1.89%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.585e+00	0.4416	21.0	2.61%	1031.2	2.13%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.579e+00	0.4417	7.0	0.87%	287.2	0.59%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.567e+00	0.4440	11.0	1.36%	495.9	1.03%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.534e+00	0.4563	12.0	1.49%	552.5	1.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.531e+00	0.4563	49.0	6.08%	2612.2	5.40%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.517e+00	0.4591	22.0	2.73%	1098.5	2.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.492e+00	0.4678	31.0	3.85%	1604.7	3.32%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.478e+00	0.4716	4.0	0.50%	146.7	0.30%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.459e+00	0.4782	15.0	1.86%	724.3	1.50%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.459e+00	0.4782	82.0	10.17%	4532.2	9.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.450e+00	0.4782	14.0	1.74%	671.4	1.39%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.446e+00	0.4782	6.0	0.74%	248.1	0.51%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.444e+00	0.4782	9.0	1.12%	404.4	0.84%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.435e+00	0.4782	10.0	1.24%	458.6	0.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.412e+00	0.4847	6.0	0.74%	251.2	0.52%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.410e+00	0.4847	29.0	3.60%	1510.5	3.12%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.410e+00	0.4847	20.0	2.48%	1007.3	2.08%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.393e+00	0.4859	13.0	1.61%	625.1	1.29%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.388e+00	0.4859	20.0	2.48%	1011.9	2.09%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.371e+00	0.4914	73.0	9.06%	4043.6	8.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.346e+00	0.5014	3.0	0.37%	106.3	0.22%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.321e+00	0.5114	74.0	9.18%	4120.5	8.52%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.306e+00	0.5161	42.0	5.21%	2276.5	4.71%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.299e+00	0.5170	19.0	2.36%	972.1	2.01%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.292e+00	0.5181	7.0	0.87%	315.9	0.65%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.264e+00	0.5298	7.0	0.87%	318.7	0.66%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.254e+00	0.5328	164.0	20.35%	9433.0	19.50%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.245e+00	0.5345	101.0	12.53%	5729.0	11.84%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.238e+00	0.5358	19.0	2.36%	984.7	2.04%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.234e+00	0.5358	6.0	0.74%	268.7	0.56%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.226e+00	0.5369	30.0	3.72%	1611.4	3.33%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.215e+00	0.5401	60.0	7.44%	3346.3	6.92%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.213e+00	0.5401	27.0	3.35%	1443.1	2.98%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.175e+00	0.5564	25.0	3.10%	1339.0	2.77%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.172e+00	0.5564	3.0	0.37%	117.5	0.24%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.169e+00	0.5564	17.0	2.11%	885.7	1.83%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.159e+00	0.5564	12.0	1.49%	606.1	1.25%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.159e+00	0.5564	12.0	1.49%	606.9	1.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.152e+00	0.5564	46.0	5.71%	2555.7	5.28%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.145e+00	0.5569	56.0	6.95%	3139.6	6.49%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.143e+00	0.5569	3.0	0.37%	119.9	0.25%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.119e+00	0.5659	4.0	0.50%	173.2	0.36%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.097e+00	0.5761	4.0	0.50%	175.6	0.36%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.082e+00	0.5822	8.0	0.99%	395.2	0.82%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.046e+00	0.6005	9.0	1.12%	456.1	0.94%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.867e-01	0.6341	42.0	5.21%	2379.4	4.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.680e-01	0.6431	26.0	3.23%	1450.3	3.00%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.546e-01	0.6487	2.0	0.25%	80.2	0.17%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-9.257e-01	0.6647	7.0	0.87%	361.3	0.75%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.197e-01	0.6656	35.0	4.34%	1992.2	4.12%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.106e-01	0.6686	48.0	5.96%	2761.7	5.71%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.075e-01	0.6686	1.0	0.12%	31.8	0.07%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.072e-01	0.6686	32.0	3.97%	1820.5	3.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.992e-01	0.6686	5.0	0.62%	251.1	0.52%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.803e-01	0.6769	11.0	1.36%	599.4	1.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.779e-01	0.6769	14.0	1.74%	774.5	1.60%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.678e-01	0.6793	5.0	0.62%	255.8	0.53%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.673e-01	0.6793	27.0	3.35%	1539.4	3.18%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.615e-01	0.6793	12.0	1.49%	661.8	1.37%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.375e-01	0.6909	19.0	2.36%	1077.9	2.23%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.203e-01	0.6999	16.0	1.99%	905.3	1.87%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.984e-01	0.7122	28.0	3.47%	1621.6	3.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.973e-01	0.7122	12.0	1.49%	675.5	1.40%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.930e-01	0.7122	7.0	0.87%	382.3	0.79%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.927e-01	0.7122	4.0	0.50%	207.9	0.43%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.885e-01	0.7122	13.0	1.61%	736.1	1.52%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.672e-01	0.7192	19.0	2.36%	1097.2	2.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.633e-01	0.7192	21.0	2.61%	1217.5	2.52%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.528e-01	0.7235	31.0	3.85%	1816.5	3.76%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.473e-01	0.7244	7.0	0.87%	390.9	0.81%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.283e-01	0.7352	10.0	1.24%	572.1	1.18%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.102e-01	0.7455	56.0	6.95%	3330.7	6.89%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.030e-01	0.7477	8.0	0.99%	458.1	0.95%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.005e-01	0.7477	5.0	0.62%	279.0	0.58%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.802e-01	0.7588	78.0	9.68%	4667.4	9.65%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.334e-01	0.7918	3.0	0.37%	168.3	0.35%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.298e-01	0.7918	11.0	1.36%	657.0	1.36%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.260e-01	0.7918	3.0	0.37%	169.5	0.35%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.215e-01	0.7918	12.0	1.49%	719.8	1.49%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.970e-01	0.8079	3.0	0.37%	173.2	0.36%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.959e-01	0.8079	5.0	0.62%	297.8	0.62%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.922e-01	0.8079	42.0	5.21%	2550.8	5.27%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.864e-01	0.8079	80.0	9.93%	4851.2	10.03%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.833e-01	0.8079	29.0	3.60%	1766.4	3.65%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.748e-01	0.8097	6.0	0.74%	363.9	0.75%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.716e-01	0.8097	9.0	1.12%	549.0	1.14%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.651e-01	0.8112	17.0	2.11%	1042.8	2.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.605e-01	0.8118	72.0	8.93%	4386.6	9.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.527e-01	0.8118	7.0	0.87%	430.9	0.89%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.527e-01	0.8118	7.0	0.87%	430.5	0.89%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.457e-01	0.8143	57.0	7.07%	3487.5	7.21%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.332e-01	0.8214	1.0	0.12%	53.7	0.11%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.296e-01	0.8214	8.0	0.99%	498.9	1.03%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.264e-01	0.8214	15.0	1.86%	933.1	1.93%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.138e-01	0.8279	65.0	8.06%	3995.9	8.26%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.110e-01	0.8279	10.0	1.24%	628.8	1.30%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.036e-01	0.8301	8.0	0.99%	505.3	1.04%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.929e-01	0.8359	57.0	7.07%	3523.6	7.28%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.837e-01	0.8405	5.0	0.62%	320.1	0.66%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.829e-01	0.8405	3.0	0.37%	191.1	0.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.824e-01	0.8405	9.0	1.12%	574.7	1.19%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.632e-01	0.8484	12.0	1.49%	769.6	1.59%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.584e-01	0.8493	1.0	0.12%	60.2	0.12%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.539e-01	0.8500	14.0	1.74%	898.7	1.86%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.503e-01	0.8500	25.0	3.10%	1585.0	3.28%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.368e-01	0.8584	6.0	0.74%	396.0	0.82%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.344e-01	0.8584	3.0	0.37%	200.7	0.42%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.301e-01	0.8584	20.0	2.48%	1284.5	2.66%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.263e-01	0.8584	13.0	1.61%	846.9	1.75%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.243e-01	0.8584	3.0	0.37%	202.9	0.42%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.186e-01	0.8584	19.0	2.36%	1227.7	2.54%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.104e-01	0.8624	8.0	0.99%	534.0	1.10%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.100e-01	0.8624	48.0	5.96%	3032.3	6.27%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.010e-01	0.8644	73.0	9.06%	4576.2	9.46%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.962e-01	0.8654	120.0	14.89%	7452.5	15.41%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.875e-01	0.8699	10.0	1.24%	670.8	1.39%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.859e-01	0.8699	12.0	1.49%	799.1	1.65%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.823e-01	0.8699	65.0	8.06%	4102.3	8.48%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.789e-01	0.8699	2.0	0.25%	142.0	0.29%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.728e-01	0.8706	1.0	0.12%	70.8	0.15%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.688e-01	0.8711	21.0	2.61%	1379.4	2.85%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.598e-01	0.8758	9.0	1.12%	616.4	1.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.573e-01	0.8758	9.0	1.12%	617.3	1.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.526e-01	0.8761	10.0	1.24%	684.9	1.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.475e-01	0.8777	4.0	0.50%	288.2	0.60%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.473e-01	0.8777	3.0	0.37%	219.7	0.45%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.418e-01	0.8777	16.0	1.99%	1076.5	2.23%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.346e-01	0.8800	45.0	5.58%	2907.2	6.01%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.323e-01	0.8800	12.0	1.49%	823.1	1.70%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.273e-01	0.8805	14.0	1.74%	955.6	1.98%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.224e-01	0.8819	29.0	3.60%	1914.1	3.96%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.191e-01	0.8819	19.0	2.36%	1281.5	2.65%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.150e-01	0.8819	2.0	0.25%	155.1	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.150e-01	0.8819	2.0	0.25%	155.1	0.32%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.067e-01	0.8840	30.0	3.72%	1989.3	4.11%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.913e-01	0.8948	4.0	0.50%	305.4	0.63%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.883e-01	0.8948	1.0	0.12%	83.6	0.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.743e-01	0.9042	13.0	1.61%	919.7	1.90%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.730e-01	0.9042	8.0	0.99%	587.2	1.21%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.714e-01	0.9042	10.0	1.24%	722.7	1.49%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.697e-01	0.9042	2.0	0.25%	166.9	0.35%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.620e-01	0.9042	81.0	10.05%	5224.6	10.80%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.437e-01	0.9173	3.0	0.37%	249.8	0.52%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.268e-01	0.9299	83.0	10.30%	5399.9	11.16%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.249e-01	0.9299	36.0	4.47%	2445.1	5.06%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.241e-01	0.9299	33.0	4.09%	2254.5	4.66%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.034e-01	0.9429	80.0	9.93%	5249.2	10.85%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.978e-01	0.9451	6.0	0.74%	487.9	1.01%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.878e-01	0.9517	49.0	6.08%	3320.4	6.86%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.875e-01	0.9517	3.0	0.37%	271.3	0.56%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.756e-01	0.9573	36.0	4.47%	2504.4	5.18%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.659e-01	0.9636	13.0	1.61%	997.4	2.06%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.646e-01	0.9636	1.0	0.12%	113.1	0.23%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.641e-01	0.9636	18.0	2.23%	1337.2	2.76%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.638e-01	0.9636	20.0	2.48%	1471.5	3.04%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.627e-01	0.9636	2.0	0.25%	203.0	0.42%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.594e-01	0.9636	13.0	1.61%	1003.7	2.08%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.591e-01	0.9636	6.0	0.74%	511.0	1.06%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.535e-01	0.9636	61.0	7.57%	4139.9	8.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.497e-01	0.9636	14.0	1.74%	1081.6	2.24%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.469e-01	0.9636	103.0	12.78%	6798.6	14.06%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.341e-01	0.9647	4.0	0.50%	378.7	0.78%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.193e-01	0.9760	62.0	7.69%	4273.8	8.84%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.170e-01	0.9760	71.0	8.81%	4853.8	10.04%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.058e-01	0.9833	22.0	2.73%	1683.9	3.48%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-9.816e-02	0.9879	1.0	0.12%	142.2	0.29%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.389e-02	0.9892	26.0	3.23%	1975.7	4.08%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-9.165e-02	0.9892	20.0	2.48%	1572.0	3.25%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.816e-02	0.9892	54.0	6.70%	3836.8	7.93%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.172e-02	0.9924	12.0	1.49%	1028.0	2.13%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.907e-02	1.0000	3.0	0.37%	353.9	0.73%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.889e-02	1.0000	14.0	1.74%	1194.2	2.47%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.427e-02	1.0000	4.0	0.50%	459.6	0.95%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.168e-02	1.0000	1.0	0.12%	179.8	0.37%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.719e-02	1.0000	6.0	0.74%	638.0	1.32%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.605e-02	1.0000	18.0	2.23%	1538.2	3.18%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.370e-02	1.0000	152.0	18.86%	10279.0	21.25%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.208e-02	1.0000	1.0	0.12%	191.9	0.40%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.889e-02	1.0000	6.0	0.74%	656.3	1.36%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.569e-02	1.0000	3.0	0.37%	431.6	0.89%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.167e-02	1.0000	6.0	0.74%	712.3	1.47%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.268e-03	1.0000	2.0	0.25%	419.2	0.87%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.123e-03	1.0000	64.0	7.94%	5046.5	10.43%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-5.536e-03	1.0000	1.0	0.12%	311.7	0.64%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.488e-03	1.0000	2.0	0.25%	491.7	1.02%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	28.8	0.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	83.6	0.17%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	23.7	0.05%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	13.6	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	31.6	0.07%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	105.1	0.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	17.3	0.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	43.5	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.9	0.02%