Information for 13-CTACCAATTA (Motif 39)

A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A
Reverse Opposite:
A C G T T C G A C T G A A G C T C G A T C T A G T C A G A G C T C G T A C T A G
p-value:1e-5
log p-value:-1.287e+01
Information Content per bp:1.704
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif553.6
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets47.6 +/- 30.5bp
Average Position of motif in Background49.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nobox/MA0125.1/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CTACCAATTA
--ACCAATTA
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A
A C G T A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A

MSX2/MA0708.1/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTACCAATTA-
---CCAATTAA
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

PH0106.1_Msx1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTACCAATTA----
TGCAACTAATTAATTC
 A C G T A C G T A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T A C G T A C G T
A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

GBX2/MA0890.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTACCAATTA--
--ACCAATTAGC
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T
A C G T A C G T T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C

GBX1/MA0889.1/Jaspar

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTACCAATTA--
--ACTAATTAGC
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T
A C G T A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

MSX1/MA0666.1/Jaspar

Match Rank:6
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTACCAATTA-
---CCAATTAG
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

LBX2/MA0699.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTACCAATTA--
--GCCAATTAGC
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T
A C G T A C G T T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTACCAATTA----
AACAACCAATTAATTC
 A C G T A C G T A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CTACCAATTA-
---CCAATTAA
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T
A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CTACCAATTA--
--NCCAATTANC
 A G T C C G A T C T G A A G T C G A T C G C T A T C G A G A C T A G C T T G C A A C G T A C G T
A C G T A C G T C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C