Information for 1-GCTAAAAATAGHCHHN (Motif 1)

A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
Reverse Opposite:
G C A T C T A G C T G A A C T G C A T G A G T C A C G T C G T A A C G T A G C T A C G T C G A T A C G T C T G A C T A G T G A C
p-value:1e-43
log p-value:-1.001e+02
Information Content per bp:1.670
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.32%
Number of Background Sequences with motif38.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets44.4 +/- 18.8bp
Average Position of motif in Background51.0 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCTAAAAATAGHCHHN
GCTAAAAATAGC----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
TCTAAAAATAGA----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
DCYAAAAATAGM----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GCTAAAAATAGHCHHN
ATGCTAAAAATAGAA---
 A C G T A C G T A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
ACTATAAATAGA----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:6
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
GCTATAAATAGC----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GCTAAAAATAGHCHHN
KCCAAAAATAGC----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.87
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
-CCAAAAATAG-----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCTAAAAATAGHCHHN
-CCATATATGG-----
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTAAAAATAGHCHHN
-GTATAAAAGGCGGGG
 A C T G A G T C A G C T C G T A C G T A C G T A C T G A C G T A A C G T C G T A T C A G G T A C T G A C G A C T G A C T C G T A
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G