Information for 9-TTGATTAGCCAAAYAG (Motif 9)

C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
Reverse Opposite:
G T A C A C G T C T G A A C G T C G A T A G C T C T A G A C T G G A T C A C G T T C G A C T G A C A G T A G T C C G T A C G T A
p-value:1e-12
log p-value:-2.791e+01
Information Content per bp:1.740
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif26.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets46.7 +/- 26.4bp
Average Position of motif in Background54.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TTGATTAGCCAAAYAG
ACCGGTTGATCACCTGA----
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTGATTAGCCAAAYAG
TTGTTTAC--------
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXG1/MA0613.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTGATTAGCCAAAYAG
TTGTTTAC--------
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TTGATTAGCCAAAYAG
-GGATTAGC-------
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTGATTAGCCAAAYAG
NTGTTTAYATWW----
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTGATTAGCCAAAYAG
ACTTAGTTAACTAAAAA-
 A C G T A C G T C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A A C G T

PH0174.1_Vax1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TTGATTAGCCAAAYAG
ACGTTAATTAACCCAG---
 A C G T A C G T A C G T C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G A C G T A C G T A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TTGATTAGCCAAAYAG
ATGTTTAC--------
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTGATTAGCCAAAYAG
---ACTAGCCAATCA-
 C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TTGATTAGCCAAAYAG
AGGTTAATTAGCTGAT---
 A C G T A C G T A C G T C G A T A C G T A C T G G T C A A G C T A C G T C G T A C T A G T A G C G A T C C T G A C G T A T C G A A G C T C G T A C A T G
T C G A T A C G C T A G A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G G A T C A G C T A T C G C T G A C A G T A C G T A C G T A C G T