Information for 14-GTTGGGTCAC (Motif 29)

A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A G T C A G T C G T A C C G T A C G T A A G T C
p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.960
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 27.8bp
Average Position of motif in Background67.7 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GTTGGGTCAC---
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GTTGGGTCAC---
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GTTGGGTCAC
---AGGTCA-
 A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGGTCAC----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTGGGTCAC
AAYTAGGTCA-
 A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGGGTCAC
-TRAGGTCA-
 A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTTGGGTCAC
--TGAGTCA-
 A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTTGGGTCAC
-AGRGGTCA-
 A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGGTCAC----
NNNNTTGGGCACNNCN
 A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTTGGGTCAC
TGCTGAGTCA-
 A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A G T C
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T