Information for 4-GGAABYCATAAATCTT (Motif 5)

C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G C G T A A C G T A G C T G A C T C G T A C G A T C T A G C T A G T C A G C G A T A C G T T A G C A G T C
p-value:1e-16
log p-value:-3.756e+01
Information Content per bp:1.748
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.1 +/- 25.2bp
Average Position of motif in Background10.4 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
---GGCCATAAATCA-
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
---GGCCATAAATCAC
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
----GCCATAAATCA-
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
---GGCCATAAATCA-
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

LEF1/MA0768.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAABYCATAAATCTT-
--AACCCTTTGATCTTT
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T A C G T
A C G T A C G T C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAABYCATAAATCTT-
-AGAGCCATAAAATTCG
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
-----TCATCAATCA-
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
GGAGGTCATTAATTAT
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
----GYCATCMATCAT
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGAABYCATAAATCTT
---NGYCATAAAWCH-
 C T A G A C T G C G T A C G T A A G C T G A T C A G T C C G T A A C G T C T G A C T G A G T C A C G A T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T