Information for 12-NTAAGCTTTCGTGTGT (Motif 13)

C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C C G T A A T G C C T A G T C G A G T C A T C G A C T A G G A T C C G A T A C G T C G T A A C G T
p-value:1e-11
log p-value:-2.725e+01
Information Content per bp:1.743
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.8 +/- 23.4bp
Average Position of motif in Background53.5 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:NTAAGCTTTCGTGTGT------
------NNGCGTGTGTGCNGCN
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:NTAAGCTTTCGTGTGT
------TTGCGTGCVA
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:NTAAGCTTTCGTGTGT
--AAGCTTG-------
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-NTAAGCTTTCGTGTGT
NYTAATCCYB-------
 A C G T C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.49
Offset:0
Orientation:forward strand
Alignment:NTAAGCTTTCGTGTGT
TTAATCCT--------
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:NTAAGCTTTCGTGTGT--
--ANTCCTTTGTCTNNNN
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:NTAAGCTTTCGTGTGT
----ACTTTCGTTTCT
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:NTAAGCTTTCGTGTGT
YTAATCCY--------
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:NTAAGCTTTCGTGTGT
-------TGCGTG---
 C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-NTAAGCTTTCGTGTGT
GCTAATCC---------
 A C G T C G T A C G A T C G T A C G T A C A T G A G T C A C G T A C G T A G C T G A T C A T C G C G A T A C T G C G A T A C T G A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T