Information for 11-GAGCCATTACCTC (Motif 8)

A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
Reverse Opposite:
C T A G C G T A C T A G A T C G A G C T C G T A C G T A C G A T A C T G A T C G A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.684e+01
Information Content per bp:1.926
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 25.5bp
Average Position of motif in Background61.9 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGCCATTACCTC
-GGCCATTAAC--
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGCCATTACCTC
AAACMATTAN---
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAGCCATTACCTC
---YCATTAMC--
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGCCATTACCTC----
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGCCATTACCTC
--GCAATTAG---
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGCCATTACCTC
-ACCGATTAG---
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGCCATTACCTC
-NNCAATTANN--
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCCATTACCTC
--CCAATTAA---
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGCCATTACCTC
--BCMATTAG---
 A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCCATTACCTC
GTCCGCCATTA----
 A C G T A C G T A C T G C G T A A C T G A T G C A G T C C G T A A C G T A C G T C T G A A T G C A G T C A C G T A G T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T