Information for 13-GCAGTATTGT (Motif 17)

A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C G T A A C G T C G T A A G T C A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 14.8bp
Average Position of motif in Background83.8 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCAGTATTGT--
-----ATTGTTA
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAGTATTGT-
--CTCATTGTC
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0067.1_Sox18_1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGTATTGT-------
-TTCAATTGTTCTAAAA
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GCAGTATTGT-
-----ATTGTT
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCAGTATTGT----
-----ATTGTTTAN
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGTATTGT-----
NNNCCATTGTGTNAN
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAGTATTGT---
---CCATTGTTNY
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAGTATTGT
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAGTATTGT
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAGTATTGT-------
AATCAATTGTTCCGCTA
 A C T G A G T C C G T A A C T G A C G T C G T A A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A