Information for 3-TTCTGGCATT (Motif 6)

G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
Reverse Opposite:
T C G A C T G A G A C T C T A G G T A C G T A C C G T A C A T G T C G A C G T A
p-value:1e-11
log p-value:-2.690e+01
Information Content per bp:1.659
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif14.45%
Number of Background Sequences with motif3376.4
Percentage of Background Sequences with motif7.18%
Average Position of motif in Targets53.5 +/- 26.9bp
Average Position of motif in Background49.7 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTCTGGCATT
GGTCTGGCAT-
 A C G T G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTCTGGCATT
-NTTGGCANN
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTCTGGCATT
--TTGGCA--
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGGCATT--
GGTTCCNNAATTTG
 A C G T A C G T G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T A C G T A C G T
C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTCTGGCATT
GGTTGGCAT-
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TTCTGGCATT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTCTGGCATT-
TGTCTGDCACCT
 A C G T G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTCTGGCATT-
-BNTGDCCTTG
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T A C G T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTCTGGCATT
NNTTGGCANN
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTCTGGCATT
-CTTGGCAA-
 G C A T A G C T G T A C C G A T C A T G C A T G G A T C C T G A G A C T A G C T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T