Information for 13-GTTTCCATGGTGA (Motif 11)

A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A G T C C G T A A C G T A C T G A C T G G C T A T C G A C G T A A G T C
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.6 +/- 20.4bp
Average Position of motif in Background67.7 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATGGTGA
NGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GTTTCCATGGTGA-
GTTGCCATGGNAAC
 A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATGGTGA
GGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTTTCCATGGTGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTTTCCATGGTGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTTTCCATGGTGA--
GTTGCCATGGCAACM
 A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATGGTGA--
CGTTGCCATGGCAACG
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTTTCCATGGTGA-
CGGTTGCCATGGCAAC
 A C G T A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTTTCCATGGTGA--
CGTTGCCATGGCAACG
 A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTTTCCATGGTGA
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C T G A C G T A C G T C A G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C T G C G T A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T