Information for 11-CTGGCACATCTBC (Motif 19)

A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
Reverse Opposite:
C T A G T A C G C G T A A C T G C G T A A C G T C T A G C G A T A C T G A G T C A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.853e+01
Information Content per bp:1.797
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.0 +/- 27.9bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTGGCACATCTBC
CTGTCTGTCACCT----
 A C G T A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCACATCTBC
TGTCTGDCACCT----
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACATCTBC
NTTGGCANN-----
 A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGGCACATCTBC
GGTCTGGCAT------
 A C G T A C G T A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGGCACATCTBC
-TGACACCT----
 A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGCACATCTBC
TTGGCA-------
 A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCACATCTBC
GGTTGGCAT------
 A C G T A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACATCTBC
CTTGGCAA------
 A C G T A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGGCACATCTBC-
ATGCCACGTCATCA
 A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

CREB3/MA0638.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGCACATCTBC-
GTGCCACGTCATCA
 A G T C A C G T C T A G A C T G A G T C C G T A A G T C G T C A A C G T A G T C C G A T A C G T A G T C A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A