Information for 2-CCSCGGCRCTCCGACC (Motif 4)

A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
Reverse Opposite:
A T C G A T C G A C G T A G T C C T A G A C T G C T G A C T A G A G T C A C T G A G T C G T A C A C T G A T C G A C T G A C T G
p-value:1e-13
log p-value:-3.074e+01
Information Content per bp:1.838
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.2 +/- 19.2bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCSCGGCRCTCCGACC
TACGCCCCGCCACTCTG---
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCSCGGCRCTCCGACC---
GCCTCCTCCMTCWGACTGKS
 A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

NR2C2/MA0504.1/Jaspar

Match Rank:3
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCSCGGCRCTCCGACC---
----TGACCTCTGACCCCN
 A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCSCGGCRCTCCGACC
AATCGCACTGCATTCCG---
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CCSCGGCRCTCCGACC
TTGGGGGCGCCCCTAG-
 A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.48
Offset:7
Orientation:forward strand
Alignment:CCSCGGCRCTCCGACC
-------GCTCCG---
 A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:7
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----CCSCGGCRCTCCGACC
NCGACCGCTCCGCTCGAAA-
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CCSCGGCRCTCCGACC--
----TGACCTTTGACCTC
 A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

PB0010.1_Egr1_1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CCSCGGCRCTCCGACC
TCCGCCCCCGCATT------
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:10
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----CCSCGGCRCTCCGACC
ATTGCCTCAGGCAAT------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G T C A C T G A C T G A G T C C T A G A G T C A G C T A G T C G A T C C T A G C G T A A T G C A T G C
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T