Information for 2-AATGATGSCCWYK (Motif 3)

C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T
Reverse Opposite:
G T C A C T A G C G A T A T C G C T A G A T G C A G T C C G T A A C G T A G T C C G T A A C G T A C G T
p-value:1e-13
log p-value:-3.074e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 30.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0059.1_Six6_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANANNTGATACCCNATN
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PH0161.1_Six1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANNNATGATACCCCATC
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
AATNTTGATACCCTATN
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

Six3/MA0631.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANANGTGATACCCTATN
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANANGTGATACCCTATN
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

JUN/MA0488.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATGATGSCCWYK
AAGATGATGTCAT--
 A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATGATGSCCWYK
TGATTTATGGCC---
 A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AATGATGSCCWYK
NNCTNAATTATGANN---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANANNTGATACCCTATN
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATGATGSCCWYK-
ANANGTGATACCCCATT
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G C G T A A C G T A C T G A T C G A G T C A T G C C G T A A G T C A C G T A C G T
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T