Information for 14-AGKCTRATKARAA (Motif 28)

C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T G T C A C G T A A C G T G A T C C G T A A C T G T G C A A G T C A C G T
p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 25.7bp
Average Position of motif in Background40.0 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx8/MA0705.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGKCTRATKARAA
---CTAATTAG--
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGKCTRATKARAA
--NCTAATTA---
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGKCTRATKARAA---
GGGTTTAATTAAAATTC
 A C G T C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGKCTRATKARAA
-NNYTAATTAR--
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGKCTRATKARAA
---CTAATTAG--
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGKCTRATKARAA
---CTAATTAA--
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGKCTRATKARAA
--NNTAATTAGA-
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T

LHX2/MA0700.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGKCTRATKARAA
--ACTAATTAAC-
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGKCTRATKARAA
---CTAATTAG--
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

LHX6/MA0658.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGKCTRATKARAA
--ACTAATTAGC-
 C G T A A C T G A C G T A G T C A C G T C T A G C G T A A C G T A C G T C G T A C T A G C G T A C G T A
A C G T A C G T T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C A C G T