Information for 12-GTGGCTATTAAVCCTA (Motif 20)

A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C T A G A C T G A C G T C G A T C G T A C G T A A G C T C G T A A C T G G T A C A G T C C T G A G T A C
p-value:1e-8
log p-value:-2.014e+01
Information Content per bp:1.777
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.4 +/- 25.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTATTAAVCCTA
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTATTAAVCCTA
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTGGCTATTAAVCCTA
AGGACGCTGTAAAGGGA-
 A C G T A C G T A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GTGGCTATTAAVCCTA
--NGCAATTAAA----
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCTATTAAVCCTA
ANNNGGATATATCCNNN-
 A C G T A C G T A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GTGGCTATTAAVCCTA
-----TRTTTACTTW-
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GTGGCTATTAAVCCTA-
-------TTCCCCCTAC
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GTGGCTATTAAVCCTA
--GGCCATTAAC----
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GTGGCTATTAAVCCTA-
--BSNTGTTTACWYWGN
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GTGGCTATTAAVCCTA
-TCCATGTTTACTTTG
 A C T G A G C T C T A G A C T G G T A C A C G T C T G A A C G T C G A T C G T A G T C A T A G C A G T C A G T C A C G T C G T A
A C G T G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G