Information for 9-TCCAGGCAGCTTGCTC (Motif 12)

A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
Reverse Opposite:
A C T G C G T A A C T G A G T C G T C A C T G A A C T G A G T C C G A T A C T G A T G C A G T C C G A T A C T G C T A G C G T A
p-value:1e-11
log p-value:-2.599e+01
Information Content per bp:1.819
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 7.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCCAGGCAGCTTGCTC
--CTGGCAGNCTGCCA
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCCAGGCAGCTTGCTC
GTCATGCHTGRCTGS--
 A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
-GCCGCCATCTTG---
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
-GCNGCCATCTTG---
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
---TGGCAGTTGN---
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
-CCAGACAG-------
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
-TCAGNGAGCGTGAC-
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
TNNGGGCAG-------
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:TCCAGGCAGCTTGCTC
------AAGCTTG---
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGGCAGCTTGCTC
NNNTTAGGTAGCNTNT--
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T A C A G C T A C G T C T A G G T A C G C A T G T A C
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T A C G T