Information for 5-CTCATCCGCC (Motif 12)

A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C T A C G A C T G G C T A G C A T A T C G C G T A A C T G
p-value:1e-9
log p-value:-2.301e+01
Information Content per bp:1.850
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif118.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets37.4 +/- 26.5bp
Average Position of motif in Background46.8 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCATCCGCC
--YAACBGCC
 A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCATCCGCC
CCTAATCCGC-
 A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCATCCGCC------
AAGCATACGCCCAACTT
 A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATCCGCC-
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCATCCGCC
GCTAATCC---
 A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCATCCGCC
GCTAATCCCC-
 A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTCATCCGCC----
CCGTCTTCCCCCTCAC
 A C G T A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C A C G T A C G T A C G T A C G T
T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

ETV5/MA0765.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCATCCGCC
NACTTCCGGT
 A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C
G A T C T C G A A G T C C G A T C G A T G T A C G T A C A C T G A T C G G A C T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCATCCGCC-
CTAATCCTCTT
 A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTCATCCGCC---
AGGCTAATCCCCAANG
 A C G T A C G T A C G T A G T C A C G T A T G C C G T A C G A T A G T C A T G C A T C G A T G C A G T C A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G