Information for 8-AAARCAACCAGAA (Motif 8)

C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C A C G T T A C G A C T G G A C T A C G T A C T G A G T C A C G T A C G T A C G T
p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.834
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.9 +/- 29.7bp
Average Position of motif in Background58.4 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAARCAACCAGAA
TGACANARRCCAGRC
 A C G T A C G T C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAARCAACCAGAA-------
GAAGTANCACGAATNMRAGT
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AAARCAACCAGAA-
----ATGCCAGACN
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AAARCAACCAGAA------
--CAAATCCAGACATCACA
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AAARCAACCAGAA
TGCCAAAATAAACANN-
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

HSF4/MA0771.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAARCAACCAGAA
GAANNTTCTAGAA
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HSF2/MA0770.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAARCAACCAGAA
GAANGTTCTAGAA
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AAARCAACCAGAA----
-------CCAGACRSVB
 C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0093.1_Zfp105_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAARCAACCAGAA
AACAAACAACAAGAG
 A C G T A C G T C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAARCAACCAGAA
CAAAAGTAAACAAAG
 A C G T A C G T C G T A G T C A C G T A C T A G G T A C G T C A C G T A G T A C A T G C C G T A A C T G C G T A G T C A
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G