Information for 4-RARGGTSCCTKGC (Motif 3)

C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C G T C A C T G A A C T G A C T G A T C G C G T A A G T C A G T C A G C T A C G T A G T C
p-value:1e-13
log p-value:-3.223e+01
Information Content per bp:1.878
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.3 +/- 28.7bp
Average Position of motif in Background17.0 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

KLF13/MA0657.1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---RARGGTSCCTKGC--
CAAAAAGGGGCGTGGCAT
 A C G T A C G T A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C A C G T A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RARGGTSCCTKGC
---GGTCCCGCCC
 C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RARGGTSCCTKGC-
--AGGTCTCTAACC
 C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C A C G T
A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

SP4/MA0685.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RARGGTSCCTKGC---
NAAGGGGGCGTGGCTTN
 A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C A C G T A C G T A C G T
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----RARGGTSCCTKGC
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RARGGTSCCTKGC
CAAAGGTCAAGGG-
 A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RARGGTSCCTKGC
--CTGTTCCTGG-
 C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----RARGGTSCCTKGC
GGAGAAAGGTGCGA---
 A C G T A C G T A C G T A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----RARGGTSCCTKGC
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

KLF14/MA0740.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:RARGGTSCCTKGC-
AAGGGGGCGTGGCC
 C T A G C G T A C T G A A C T G A C T G A C G T A T G C A G T C A G T C A G C T A C G T A C T G A G T C A C G T
C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C