Information for 1-TGCCMTCTAGTGGYCA (Motif 1)

A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
Reverse Opposite:
A G C T A C T G C T A G T A G C A G T C G C T A A T G C G A C T C T G A A T C G C T G A A C T G A C T G A C T G A G T C T C G A
p-value:1e-54
log p-value:-1.244e+02
Information Content per bp:1.678
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.71%
Number of Background Sequences with motif149.2
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets49.8 +/- 28.1bp
Average Position of motif in Background48.3 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----TGCCMTCTAGTGGYCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---TGCCMTCTAGTGGYCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------TGCCMTCTAGTGGYCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCCMTCTAGTGGYCA
ATGCCAACC--------
 A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGCCMTCTAGTGGYCA
-GCCATCTGTT-----
 A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCMTCTAGTGGYCA
ATGCCCACC--------
 A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCCMTCTAGTGGYCA
TGWCCTCARNTGACC-
 A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCMTCTAGTGGYCA
CTGCCCGCA--------
 A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCCMTCTAGTGGYCA
NTGCCCANNGGTNA---
 A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TGCCMTCTAGTGGYCA
GGTCCCGCCCCCTTCTC----
 A C G T A C G T A C G T A C G T A C G T A G C T C T A G G T A C A G T C T G A C G A C T A T G C G A C T C T G A T A C G C A G T A C T G A T C G G A T C G T A C T C G A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T A C G T