Information for 5-CAATGCCGCC (Motif 2)

A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C
Reverse Opposite:
A C T G C T A G A T G C A C T G A C T G A G T C C G T A A C G T A C G T T C A G
p-value:1e-20
log p-value:-4.655e+01
Information Content per bp:1.823
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif8.29%
Number of Background Sequences with motif1028.1
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets48.3 +/- 22.2bp
Average Position of motif in Background48.6 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAATGCCGCC-
--ATGCCAACC
 A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAATGCCGCC-
--ATGCCCACC
 A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAATGCCGCC-----
ACTATGCCAACCTACC
 A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCCGCC--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

ETV6/MA0645.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAATGCCGCC
CACTTCCGCT
 A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C
G A T C T C G A A G T C G C A T A G C T G T A C G T A C A C T G T A G C A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAATGCCGCC---
-TTTCCCGCCMAV
 A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T A C G T A C G T
A C G T C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAATGCCGCC-
ACAAAGGNBCCT
 A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCCGCC-
CGACCAACTGCCATGC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAATGCCGCC
AGGTCANTGACCTN
 A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAATGCCGCC-----
GGTCCCGCCCCCTTCTC
 A C G T A C G T A G T C C G T A G T C A A C G T A C T G G T A C G T A C T A C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C