Information for 21-CCGTGTGGCCACA (Motif 27)

A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
Reverse Opposite:
C A G T A T C G C G A T T A C G A C T G A G T C A G T C G T C A T G A C C T G A A T G C C T A G T C A G
p-value:1e-7
log p-value:-1.694e+01
Information Content per bp:1.639
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif305.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets53.9 +/- 23.6bp
Average Position of motif in Background50.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGTGTGGCCACA
CAGTGTGGTCGC-
 A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTGGCCACA---
TACATGTGCACATAAAA
 A C G T A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Myc/MA0147.2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGTGTGGCCACA
CCATGTGCTT---
 A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T A C G T A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTGGCCACA
GTCATGTGACC---
 A C G T A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGTGTGGCCACA
NNHTGTGGTTWN-
 A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTGGCCACA
RTCATGTGAC----
 A C G T A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGTGTGGCCACA
GTCTGTGGTTT--
 A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGTGTGGCCACA
GCCACGTGACC---
 A C G T A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCGTGTGGCCACA----
NNGTATGTGCACATNNN
 A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PLAG1/MA0163.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGTGGCCACA
CCCCCTTGGGCCCC-
 A C G T A C G T A G T C G A T C T A C G A G C T A C T G A C G T C T A G T C A G A G T C A T G C G C T A T A G C G T C A
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T