Information for 18-CAACACAGGGAGG (Motif 25)

A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
Reverse Opposite:
A T G C A G T C A C G T A G T C A G T C A G T C C A G T A C T G A G C T A T C G A G C T A C G T C T A G
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.810
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif42.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets37.7 +/- 29.1bp
Average Position of motif in Background46.2 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAACACAGGGAGG
-AACAAAGG----
 A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CAACACAGGGAGG----
-------GGGAGGACNG
 A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAACACAGGGAGG
GAACAATGGN---
 A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAACACAGGGAGG
-RACAAWGG----
 A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAACACAGGGAGG
AAAACAAAGG----
 A C G T A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAACACAGGGAGG
GGAACAAAGR----
 A C G T A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAACACAGGGAGG
ACATCAAAGGNA--
 A C G T A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAACACAGGGAGG
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAACACAGGGAGG
---AACAGGAAGT
 A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAACACAGGGAGG
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A T G C C T G A T G A C G T C A C T A G A C T G C T A G C G T A C T A G A T C G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A