Information for 13-ATGCCTAART (Motif 40)

C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
Reverse Opposite:
G T C A A G T C A C G T G A C T G T C A A C T G C T A G T A G C G T C A G A C T
p-value:1e-4
log p-value:-1.071e+01
Information Content per bp:1.690
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif199.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets36.3 +/- 18.3bp
Average Position of motif in Background51.1 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATGCCTAART-
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGCCTAART
AGGCCTNG--
 C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGCCTAART
ATGCCCACC-
 C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGCCTAART--
ATGCATAATTCA
 C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T A C G T A C G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATGCCTAART--
ACCGTGACTAATTNN
 A C G T A C G T A C G T C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATGCCTAART
ATGCCAACC-
 C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATGCCTAART--
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C G T C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATGCCTAART
GGTGCCAAGT-
 A C G T C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATGCCTAART--
GTCATGCHTGRCTGS
 A C G T A C G T A C G T C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATGCCTAART
ATGMATATDC
 C T G A A C G T A T C G G A T C T G A C C A G T C T G A T G C A T C A G A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C