Information for 1-VGTCACGTGA (Motif 1)

T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
Reverse Opposite:
G A C T A G T C C G T A A G T C C T A G A C G T A C T G C T G A A G T C A G T C
p-value:1e-96
log p-value:-2.233e+02
Information Content per bp:1.673
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif15.21%
Number of Background Sequences with motif502.5
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets54.2 +/- 22.7bp
Average Position of motif in Background48.1 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:VGTCACGTGA
GGTCACGTGA
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

TFE3/MA0831.1/Jaspar

Match Rank:2
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:VGTCACGTGA-
-GTCACGTGNT
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A A C G T
A C G T C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:forward strand
Alignment:VGTCACGTGA
-GHCACGTG-
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T

Arntl/MA0603.1/Jaspar

Match Rank:4
Score:0.96
Offset:0
Orientation:forward strand
Alignment:VGTCACGTGA
GGTCACGTGC
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.96
Offset:1
Orientation:forward strand
Alignment:VGTCACGTGA
-GNCACGTG-
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.96
Offset:1
Orientation:forward strand
Alignment:VGTCACGTGA-
-GTCACGTGGT
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A A C G T
A C G T T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T

TFEB/MA0692.1/Jaspar

Match Rank:7
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VGTCACGTGA-
-GTCACGTGAT
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A A C G T
A C G T T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

MLXIPL/MA0664.1/Jaspar

Match Rank:8
Score:0.95
Offset:1
Orientation:forward strand
Alignment:VGTCACGTGA-
-ATCACGTGAT
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A A C G T
A C G T C T G A C A G T A T G C C G T A T A G C T C A G A C G T A C T G G C T A G A C T

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.95
Offset:0
Orientation:forward strand
Alignment:VGTCACGTGA
GGTCACGTGG
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:VGTCACGTGA
NGKCACGTGM
 T C A G T C A G G A C T A G T C C G T A A G T C C T A G C G A T A C T G C T G A
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C