Information for 9-GGGCCACTAG (Motif 8)

C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T G T C A A C T G C G A T A C T G C T A G A G T C G A T C G T A C
p-value:1e-11
log p-value:-2.628e+01
Information Content per bp:1.843
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif49.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets53.3 +/- 31.2bp
Average Position of motif in Background44.4 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGCCACTAG----------
TGGCCACCAGGTGGCACTNT
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGGCCACTAG---------
TGGCCACCAGGGGGCGCTA
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGGCCACTAG
--BCMATTAG
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGGCCACTAG-
-AGCCAATCGG
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGCCACTAG-----
TAAGCCACTTGAAATT
 A C G T C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGCCACTAG-
-GGCCATTAAC
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGGCCACTAG--
RGGGCACTAACY
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGGCCACTAG--
AGGTCTCTAACC
 C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGGCCACTAG----
GTAGGTCACTGGGTCA
 A C G T A C G T C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGGCCACTAG------
ATAACCACTTGAAAATT
 A C G T C A T G C A T G A C T G A G T C G T A C C G T A T A G C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T