Information for 6-GTTTAAGCTT (Motif 6)

A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
Reverse Opposite:
G T C A C G T A A T C G G A T C A C G T C G A T C G T A C G T A G T C A T G A C
p-value:1e-11
log p-value:-2.732e+01
Information Content per bp:1.834
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif97.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets43.5 +/- 27.6bp
Average Position of motif in Background51.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GTTTAAGCTT-
----AAGCTTG
 A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

FOXF2/MA0030.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAAGCTT-
NTTGTTTACGTTNN
 A C G T A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T A C G T
G C T A C G A T A C G T C T A G A C G T A C G T A C G T C G T A A G T C A T C G A C G T C A G T A C G T T C A G

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAAGCTT
ANCGTTTANN---
 A C G T A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTTAAGCTT-
AGTTTCAGTTTC
 A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T A C G T
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTTTAAGCTT
-TTTAAT---
 A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTTTAAGCTT
--TTAATCCT
 A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GTTTAAGCTT-
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAAGCTT
GGGATTANN---
 A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAAGCTT
CGGATTAN----
 A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTTAAGCTT
GGGATTAA----
 A C G T A C G T A C T G C A G T A C G T A C G T C G T A C G T A C A T G T A G C A C G T A C G T
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T