Information for 11-GCTGCCATGASARCTG (Motif 23)

A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
Reverse Opposite:
A G T C C G T A A C T G A G C T A G C T A T C G A C G T A T G C C G T A A C G T A C T G C T A G G T A C C G T A T C A G A T G C
p-value:1e-8
log p-value:-1.894e+01
Information Content per bp:1.758
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.3 +/- 19.0bp
Average Position of motif in Background33.0 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCATGASARCTG
KGTTGCCATGGCAAC--
 A C G T A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCTGCCATGASARCTG
GTTGCCATGGCAACCG
 A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCTGCCATGASARCTG
GTTGCCATGGNAAC--
 A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCATGASARCTG
CGTTGCCATGGCAACG-
 A C G T A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCTGCCATGASARCTG
-TTGCCATGGCAACC-
 A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCATGASARCTG
CGTTGCCATGGCAACG-
 A C G T A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCTGCCATGASARCTG
-TTGCCATGGCAACN-
 A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCATGASARCTG
CGTTGCCATGGCAACG-
 A C G T A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCATGASARCTG
CGTTGCCATGGCAACG-
 A C G T A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTGCCATGASARCTG
-CTGCCCGCA------
 A T C G A G T C A C G T A C T G A G T C A G T C G T C A C G A T A T C G T G C A A T G C C T G A C T G A A G T C A C G T T A C G
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T