Information for 7-CYTTTATARAGTYAKR (Motif 9)

A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
Reverse Opposite:
A G C T G T A C A C G T C T A G C G T A A G T C C G A T G A T C A G C T G C T A C A G T C G T A C G T A C G T A C T G A A C T G
p-value:1e-13
log p-value:-3.192e+01
Information Content per bp:1.769
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 19.6bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CYTTTATARAGTYAKR
CCTTTTATAGNC-----
 A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CYTTTATARAGTYAKR
------AAAAGTCAA-
 A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CYTTTATARAGTYAKR
NNNNNNCTTTTATAN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CYTTTATARAGTYAKR
NNNNNNCTTTTATAN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CYTTTATARAGTYAKR
DGWTTTATGRCN-----
 A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CYTTTATARAGTYAKR
-TTTTATKRGG-----
 A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CYTTTATARAGTYAKR
TCTTTATATATAAATA--
 A C G T A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CYTTTATARAGTYAKR
ANCGTTTANN--------
 A C G T A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.49
Offset:10
Orientation:reverse strand
Alignment:CYTTTATARAGTYAKR
----------GTCATN
 A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---CYTTTATARAGTYAKR
NNANTTTTATTGGNNN---
 A C G T A C G T A C G T A G T C A G C T A C G T C G A T C G A T G C T A C A G T C T G A C T A G C G T A T C A G A C G T A G T C C G T A A C T G C T G A
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T