Information for 25-AAGGCGGGAATTTCCT (Motif 42)

C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
Reverse Opposite:
C G T A A T C G C T A G C G T A C G T A C G T A A C G T A C G T A G T C A G T C G T A C A C T G A G T C A G T C A C G T A C G T
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.915
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.2 +/- 15.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.77
Offset:5
Orientation:reverse strand
Alignment:AAGGCGGGAATTTCCT
-----GGGAATTTCC-
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.74
Offset:5
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
-----GGGAATTTCC-
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.69
Offset:5
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
-----GGGGATTTCC-
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
CWGGCGGGAA------
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
-----GGGGATTTCC-
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
--GGCGGGAAAH----
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
----NGGGGATTTCCC
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAGGCGGGAATTTCCT
-TGGCGGGAAAHB---
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGGCGGGAATTTCCT
--GGCGGGAARN----
 C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGGCGGGAATTTCCT
BTKGGCGGGAAA-----
 A C G T C G T A C G T A A C T G C T A G G T A C A C T G A C T G A C T G C G T A C G T A C G A T C G A T A C G T A G T C A T G C A C G T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T