Information for 7-GHGGCCAAAGGAG (Motif 8)

A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C T G A C T G A G T C A G T C C A T G A G T C
p-value:1e-11
log p-value:-2.601e+01
Information Content per bp:1.852
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 27.1bp
Average Position of motif in Background50.5 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GHGGCCAAAGGAG-
GGGGCCCAAGGGGG
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GHGGCCAAAGGAG-
AAACAGACAAAGGAAT
 A C G T A C G T A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GHGGCCAAAGGAG
--TGCCAA-----
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GHGGCCAAAGGAG
CGTGCCAAG----
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GHGGCCAAAGGAG
-AAAACAAAGG--
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GHGGCCAAAGGAG
-GGAACAAAGR--
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GHGGCCAAAGGAG
ACTAGCCAATCA--
 A C G T A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GHGGCCAAAGGAG-----
--TGCCAAAATAAACANN
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GHGGCCAAAGGAG
--AGCCAATCGG-
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GHGGCCAAAGGAG
---RACAAWGG--
 A C T G G T A C C T A G A C T G A G T C A G T C G T C A C G T A C G T A A C T G C T A G C G T A C T A G
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T