Information for 5-GGCGACCTAT (Motif 5)

A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T
Reverse Opposite:
T G C A C A G T T G C A A T C G T A C G A C G T A G T C C T A G A T G C T A G C
p-value:1e-12
log p-value:-2.813e+01
Information Content per bp:1.668
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif7.75%
Number of Background Sequences with motif1310.4
Percentage of Background Sequences with motif2.73%
Average Position of motif in Targets48.0 +/- 24.4bp
Average Position of motif in Background48.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCGACCTAT----
NNNGTGACCTTTGNNN
 A C G T A C G T A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGCGACCTAT----
NNNNTGACCTTTNNNN
 A C G T A C G T A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGCGACCTAT
GGCGCGCT--
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGCGACCTAT
-GTGACCTT-
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCGACCTAT--
--TGACCTTGAT
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCGACCTAT
--TGACCT--
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGCGACCTAT----
--TGACCTTTNCNT
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCGACCTAT
--TGACCYCT
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCGACCTAT-
CNNTTGACCTTTG
 A C G T A C G T A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCGACCTAT-
-NTGACCTTGA
 A T C G A T C G G A T C T C A G T G C A A T G C T A G C A C G T G T C A A C G T A C G T
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A