Information for 5-AGTCTGGCTCAHT (Motif 5)

C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
Reverse Opposite:
G T C A C A G T C G A T T A C G C G T A A T C G A G T C A G T C C G T A A C T G C T G A A G T C A C G T
p-value:1e-14
log p-value:-3.412e+01
Information Content per bp:1.776
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.6 +/- 26.5bp
Average Position of motif in Background46.5 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGCTCAHT
TWGTCTGV------
 A C G T C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGCTCAHT
CTGTCTGG------
 A C G T C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGTCTGGCTCAHT
GGTCTGGCAT---
 C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGTCTGGCTCAHT
TGTCTGDCACCT-
 C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGGCTCAHT
VBSYGTCTGG------
 A C G T A C G T A C G T C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AGTCTGGCTCAHT
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGCTCAHT
CTGTCTGTCACCT-
 A C G T C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTCTGGCTCAHT
--TGTGACTCATT
 C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A C G T A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTCTGGCTCAHT
-NNVTGASTCATN
 C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A C G T A T C G C T A G T G C A C G A T A C T G C T G A A T G C G C A T T G A C G C T A A G C T G A T C

FOS::JUN/MA0099.2/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGTCTGGCTCAHT
----TGACTCA--
 C G T A C T A G A G C T A G T C A C G T A C T G C T A G A T G C C G A T A T G C C G T A G C T A A C G T
A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T