Information for 2-TTCTTGCATTTTAAAA (Motif 16)

C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A
Reverse Opposite:
C G A T A C G T C G A T C A G T C G T A G C T A T C G A G T C A C A G T T C A G T G A C T G C A C G T A C T A G T G C A G C T A
p-value:1e-12
log p-value:-2.954e+01
Information Content per bp:1.637
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.2 +/- 22.3bp
Average Position of motif in Background80.3 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:TTCTTGCATTTTAAAA--
--------TTTGAAACCG
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TTCTTGCATTTTAAAA
-------NATTCAAAT
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:TTCTTGCATTTTAAAA--
------CCTTTTATAGNC
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0162.1_Sfpi1_2/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTGCATTTTAAAA
GGTTCCNNAATTTG----
 A C G T A C G T C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A
C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TTCTTGCATTTTAAAA--
-------ATTGCACAATA
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TTCTTGCATTTTAAAA--
---CCGTATTATAAACAA
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T A C G T
A C G T A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PB0174.1_Sox30_2/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TTCTTGCATTTTAAAA---
---TAAGATTATAATACGG
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TTCTTGCATTTTAAAA
-ATTTGCATAACAAAG
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-TTCTTGCATTTTAAAA
NTTATTGATTTTTT---
 A C G T C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TTCTTGCATTTTAAAA-
-------GTCGTAAAAA
 C G A T A C G T A G T C G C A T A C G T A C T G A G T C G T C A A C G T A C G T C G A T G C A T G C T A G C T A T G C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A