Information for 8-TTTSTGCCACCTTCTG (Motif 6)

G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G
Reverse Opposite:
A G T C C T G A A C T G G T C A C T G A A T C G C T A G C A G T A C T G A T C G A G T C G T C A A T G C G T C A C T G A C T G A
p-value:1e-12
log p-value:-2.973e+01
Information Content per bp:1.790
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.7 +/- 22.4bp
Average Position of motif in Background54.3 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTTSTGCCACCTTCTG----
-TAGCGCCCCCTGGTGGCCA
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTTSTGCCACCTTCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTSTGCCACCTTCTG----
ANAGTGCCACCTGGTGGCCA
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TTTSTGCCACCTTCTG---
----GGCCYCCTGCTGDGH
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TTTSTGCCACCTTCTG--
------CCCCCTGCTGTG
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTTSTGCCACCTTCTG
----SNGCACCTGCHS
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G
A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTTSTGCCACCTTCTG
CTGTCTGTCACCT----
 A C G T G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTTSTGCCACCTTCTG
----TGACACCT----
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G
A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTTSTGCCACCTTCTG---
----GACCCCCCGCTGTGC
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTTSTGCCACCTTCTG--
----GACCCCCCGCTGTG
 G A C T A G C T A C G T A T C G A C G T A C T G A T G C A G T C G C T A A G T C A T G C A G C T A C G T A G T C A G C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G