Information for 3-SYTYTTRTTWCCS (Motif 4)

A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
Reverse Opposite:
A T G C A C T G A C T G G C T A G T C A C G T A A G T C C T G A G T C A C T G A G T C A C T G A A T C G
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.815
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.1 +/- 19.7bp
Average Position of motif in Background46.1 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-SYTYTTRTTWCCS--
NAATTTTATTACCNNN
 A C G T A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS
-NTTTTATTACN-
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-SYTYTTRTTWCCS--
NAATTTTATTACCTNN
 A C G T A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS
-NTTTTATGAC--
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--SYTYTTRTTWCCS-
TNAATTTTATTACCTN
 A C G T A C G T A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS
--TTTTATGGCTN
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS
-TTTTTATTGC--
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS
--TTTTATTGC--
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:SYTYTTRTTWCCS---
--TTTTTTTTCNNGTN
 A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G A C G T A C G T A C G T
A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-SYTYTTRTTWCCS
GKMTCADRTTWC--
 A C G T A T G C A G C T A C G T A G C T A C G T A G C T C T A G A C G T A C G T C G A T A G T C A G T C T A C G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T