Information for 6-ATGGCAACAA (Motif 12)

T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
Reverse Opposite:
A G C T C G A T A T C G A G C T A C G T A C T G G A T C G T A C G T C A A C G T
p-value:1e-9
log p-value:-2.085e+01
Information Content per bp:1.496
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.07%
Number of Background Sequences with motif996.3
Percentage of Background Sequences with motif2.38%
Average Position of motif in Targets53.2 +/- 26.0bp
Average Position of motif in Background49.3 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCAACAA
TNNGGGCAG---
 A C G T A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAACAA
TTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ATGGCAACAA
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATGGCAACAA
SCCTAGCAACAG
 A C G T A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCAACAA
TTGCCATGGCAACC-
 A C G T A C G T A C G T A C G T A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAACAA
AATGGAAAAT-
 A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAACAA
NTTGGCANN--
 A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGGCAACAA
TTGGCA----
 T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGGCAACAA-
-TTGCAACATN
 T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A A C G T
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAACAA
CTTGGCAA---
 A C G T T G C A C A G T C A T G C T A G T G A C T G C A T C G A T A G C G C T A T C G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T