Information for 1-AACTHAGTTA (Motif 2)

C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A T G C A G T A C A C G T C G T A G C T A C A T G C A G T A C G T
p-value:1e-11
log p-value:-2.694e+01
Information Content per bp:1.748
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif9.76%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets34.2 +/- 27.1bp
Average Position of motif in Background52.4 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AACTHAGTTA--
--ACTAGTTAAC
 C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AACTHAGTTA-------
NTTTTAGTTAACNNAGN
 C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AACTHAGTTA
TAATTTAATTA
 A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AACTHAGTTA-------
NNNTTAGTTAACTNANN
 C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AACTHAGTTA
TAATTTAATTA
 A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACTHAGTTA
TAATTTAATTA
 A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AACTHAGTTA----
TACCCTAGTTACCGA
 A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AACTHAGTTA
NTAATBNAATTA
 A C G T A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACTHAGTTA-----
GAAAACTAGTTAACATC
 A C G T A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AACTHAGTTA------
ANNNCTAGTTAACNGNN
 A C G T C G T A G T C A G T A C C G A T G C A T G T C A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T