Information for 3-ATCGACACTT (Motif 20)

C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T
Reverse Opposite:
C T G A C G T A A C T G C G A T A T C G C G A T G T A C C A T G G T C A G A C T
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.699
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif3.83%
Number of Background Sequences with motif222.0
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets54.9 +/- 20.4bp
Average Position of motif in Background45.7 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ATCGACACTT--
---ACCACTTAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATCGACACTT----
NNGGCGACACCTCNNN
 A C G T A C G T C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ATCGACACTT---
---ACCACTTGAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:ATCGACACTT---
----CCACTTGAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATCGACACTT--
--MRSCACTYAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ATCGACACTT--
---ACCACTTAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATCGACACTT---
---RSCACTYRAG
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:ATCGACACTT--
----GCACTTAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATCGACACTT
--TGACACCT
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ATCGACACTT--
--AASCACTCAA
 C T G A A C G T G T A C C A T G G C T A A T G C G C T A T G A C C G A T A G C T A C G T A C G T
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A