Information for 11-GTTKKYTTTGGCA (Motif 24)

A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A
Reverse Opposite:
A C G T A C T G A G T C G T A C C G T A C G T A C G T A C T G A T G C A G T A C C G T A C G T A A G T C
p-value:1e-7
log p-value:-1.713e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets62.1 +/- 23.6bp
Average Position of motif in Background49.4 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GTTKKYTTTGGCA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:GTTKKYTTTGGCA--
-----NNTTGGCANN
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:GTTKKYTTTGGCA--
------NTTGGCANN
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:7
Orientation:forward strand
Alignment:GTTKKYTTTGGCA
-------TTGGCA
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GTTKKYTTTGGCA-
------CTTGGCAA
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GTTKKYTTTGGCA-
-----GGTTGGCAT
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTKKYTTTGGCA
GCTATTTTTAGC-
 A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTKKYTTTGGCA-
GNATTTTTTTTTTGANC
 A C G T A C G T A C G T A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTTKKYTTTGGCA
GAATGTTTGTTT-----
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTTKKYTTTGGCA-
TTCTATTTTTAGNNN
 A C G T A C T G A C G T A C G T C A G T A C G T A G C T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T