Information for 19-GCATGGATCA (Motif 25)

A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G T C A G T C C G T A A C G T A C T G A G T C
p-value:1e-4
log p-value:-9.599e+00
Information Content per bp:1.962
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.0 +/- 20.6bp
Average Position of motif in Background22.3 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCATGGATCA
TCATCAATCA
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCATGGATCA-
---NGGATTAN
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

FOS/MA0476.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCATGGATCA--
-NATGAGTCANN
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCATGGATCA--
-AATGTATCAAT
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCATGGATCA-
GYCATCMATCAT
 A C G T A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

JUND/MA0491.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCATGGATCA--
-NATGAGTCACN
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCATGGATCA
GCCATAAATCA
 A C G T A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCATGGATCA
NTATCGATTA
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

NFE2/MA0841.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCATGGATCA--
-CATGACTCATC
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCATGGATCA-
--ATGACTCAT
 A C T G A G T C C G T A A C G T A C T G C T A G C G T A A C G T A G T C C G T A A C G T
A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T