Information for 10-NAATTCCTTGACC (Motif 17)

C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C
Reverse Opposite:
A C T G C T A G A G C T A G T C G T C A C T G A A C T G A T C G C T G A T C G A A G C T A C G T G A C T
p-value:1e-9
log p-value:-2.194e+01
Information Content per bp:1.738
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif20.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.2 +/- 19.6bp
Average Position of motif in Background49.4 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:NAATTCCTTGACC-
--TGACCTTGACCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:NAATTCCTTGACC-
--TGACCTTGACCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-NAATTCCTTGACC-
TGAACCCGATGACCC
 A C G T C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:8
Orientation:reverse strand
Alignment:NAATTCCTTGACC-
--------TGACCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:NAATTCCTTGACC----
----CNNTTGACCTTTG
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:NAATTCCTTGACC-------
----NNCNTGACCCCGCTCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:NAATTCCTTGACC---
--------TGACCYCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:NAATTCCTTGACC
GCATTCCAGN---
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C
C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:NAATTCCTTGACC-------
---TGTCGTGACCCCTTAAT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:NAATTCCTTGACC-
NAGGTCANTGACCT
 C T A G T G C A C T G A A C G T A G C T A T G C A G T C A G C T A C G T A C T G C T G A A G T C A G T C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T