Information for 13-GCCAGCAGGTCCT (Motif 16)

A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
Reverse Opposite:
C T G A C T A G A C T G C G T A A G T C A G T C A C G T A C T G A G T C C G A T A C T G A C T G G T A C
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 22.0bp
Average Position of motif in Background52.7 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCCAGCAGGTCCT-
--SDGCAGGTGCNS
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T A C G T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SNAI2/MA0745.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCAGCAGGTCCT
---AACAGGTGT-
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCAGGTCCT
DCTCAGCAGG----
 A C G T A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTCCT
---NNCAGGTGTN
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCAGGTCCT-
DCHCAGCAGGRGGCC
 A C G T A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCAGCAGGTCCT
-CCAGCTGTTN--
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCAGCAGGTCCT
--CAGCTGNT---
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTCCT
---NNCAGGTGCG
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCAGCAGGTCCT
CACAGCAGGGGG-
 A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCAGCAGGTCCT
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A G T C A G T C A G C T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T