Information for 3-TGCAGCTCCGCAG (Motif 4)

A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
Reverse Opposite:
A G T C A C G T A T C G A G T C C A T G T A C G T C G A A C T G A T G C C G A T A C T G G T A C G T C A
p-value:1e-13
log p-value:-3.145e+01
Information Content per bp:1.767
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets62.5 +/- 19.6bp
Average Position of motif in Background56.8 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGCAGCTCCGCAG
----GCTCCG---
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCAGCTCCGCAG
CGCAGCTGCG---
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGCTCCGCAG
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGCAGCTCCGCAG
-GCAGCTGTNN--
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGCAGCTCCGCAG
NNAGCAGCTGCT---
 A C G T A C G T A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCAGCTCCGCAG------
----DCHCAGCAGGRGGCC
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCAGCTCCGCAG---
----GCTCCGCCCMCY
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGCAGCTCCGCAG
--CAGCC------
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCAGCTCCGCAG
AGCAGCTGCT---
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCAGCTCCGCAG
GACAGCTGCAG--
 A C G T C A T G A G T C C G T A A T C G G T A C A C G T A G T C G T A C T C A G A T G C T G C A A C T G
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T