Information for 3-TCACGTTCCG (Motif 7)

A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
Reverse Opposite:
A T G C A C T G A T C G C G T A C G T A A G T C C T A G A C G T A C T G C G T A
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.853
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.7 +/- 27.1bp
Average Position of motif in Background41.4 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCACGTTCCG
GKVTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

Hes2/MA0616.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCACGTTCCG---
GCACGTGTCNNNN
 A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G A C G T A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCACGTTCCG
GCACGTACCC
 A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TCACGTTCCG
GKMTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

Arntl/MA0603.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCACGTTCCG
GGTCACGTGC--
 A C G T A C G T A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C A C G T A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCACGTTCCG
ATCACGTGAC-
 A C G T A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C A C G T

Id2/MA0617.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCACGTTCCG
TCACGTGC--
 A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T

BHLHE41/MA0636.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TCACGTTCCG
GTCACGTGAC-
 A C G T A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCACGTTCCG
GCACGTNC--
 A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCACGTTCCG
GCACGTAY--
 A C G T A G T C C G T A A G T C T A C G C G A T A C G T A T G C G T A C T A C G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T