Information for 3-HAAAATGGCGGCS (Motif 3)

G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
Reverse Opposite:
A T G C C A T G A T G C T G A C A C T G A G T C A T G C C G T A C A G T A G C T C G A T A C G T C A T G
p-value:1e-20
log p-value:-4.626e+01
Information Content per bp:1.675
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif4.95%
Number of Background Sequences with motif407.4
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets45.6 +/- 23.2bp
Average Position of motif in Background50.7 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:HAAAATGGCGGCS
CAAGATGGCGGC-
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:HAAAATGGCGGCS
CAAGATGGCGGC-
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:HAAAATGGCGGCS
--TAATGGCGGNC
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:HAAAATGGCGGCS----
-AAAATGGCGCCATTTT
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:HAAAATGGCGGCS-----
AAAAATGGCGCCATTTTT
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:HAAAATGGCGGCS----
NNNNTTGGCGCCGANNN
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:HAAAATGGCGGCS----
NAGANTGGCGGGGNGNA
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:HAAAATGGCGGCS
AACAAAGG-----
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:HAAAATGGCGGCS
----TTGGCA---
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:HAAAATGGCGGCS----
NNNNTTGGCGCCGANNN
 G T A C G T C A G C T A T C G A G C T A C G A T A T C G A C T G A G T C A C T G T A C G G T A C T A C G A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T